PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09640.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 456aa    MW: 51278.4 Da    PI: 9.3667
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09640.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-066587123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C++C+k F+r  nL+ H r H
  Rsa1.0_09640.1_g00001.1 65 FICEICNKGFKRDQNLQLHRRGH 87
                             89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.3E-66487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.86E-76487No hitNo description
PROSITE profilePS5015710.8666587IPR007087Zinc finger, C2H2
SMARTSM003550.0116587IPR015880Zinc finger, C2H2-like
PfamPF121711.7E-56587IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM0035593107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.86E-7137162No hitNo description
SMARTSM00355180142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MMIPDDHHHL SFPSYVLHQE PITANPSPNP NPTTSNSNKR KRNLPDPDAE VIALSPNSLM  60
TTNRFICEIC NKGFKRDQNL QLHRRGHNLP WKLKQRTDKE QVKKKVYVCP EKTCVHHDPS  120
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVMSDWKAH SKICGTREYR CDCGTLFSRK  180
DSFITHRAFC DALAEESARF ASVPPAAVAC LNNASDAEVN LGNIKPNHQQ RLPDRTSSQH  240
DQHGFNINHD NINGFTRQSS TNQLPLAANV FASSSSSSLS PSPHSASALL QNLWQLQGRQ  300
SYQWLLNENN NNIIHSGMPN NQEDYDTKKG ISLGSNLFSS EARTNYNQNG GQEMGSMSAT  360
ALLQRATQMG SKRSSSSSNN GMAFGLMTSS IFNNKEMENN IKTKEVDERG FTRDFLGVAS  420
QNRPRPILMV NHNLPTTNDG TPTTDMNHSM LYFLYE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150085.10.0PREDICTED: zinc finger protein JACKDAW isoform X2
SwissprotQ944L30.0IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLA0A078IV730.0A0A078IV73_BRANA; BnaA06g38780D protein
TrEMBLM4FB270.0M4FB27_BRARP; Uncharacterized protein
STRINGBra038293.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.10.0C2H2-like zinc finger protein